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  1. 1.
    cfTools::beta_matrix
    Beta value matrix
  2. 2.
    cfTools::CancerDetector.markers
    Cancer-specific marker parameter
  3. 3.
    cfTools::CancerDetector.reads
    Fragment-level methylation state for cancer detection
  4. 4.
    cfTools::cfDeconvolve.markers
    Tissue-specific marker parameter
  5. 5.
    cfTools::cfDeconvolve.reads
    Fragment-level methylation state for tissue deconvolution
  6. 6.
    cfTools::cfsort_markers
    cfSort markers
  7. 7.
    cfTools::cfsort_reads
    Fragment-level methylation state for cfSort tissue deconvolution
  8. 8.
    cfTools::CpG_OB_demo
    Methylation information for CpG on the original bottom strand (OB)
  9. 9.
    cfTools::CpG_OT_demo
    Methylation information for CpG on the original top strand (OT)
  10. 10.
    cfTools::demo.fragment_level.meth.bed
    Fragment-level methylation information
  11. 11.
    cfTools::demo.refo_frag.bed
    Fragment-level information
  12. 12.
    cfTools::demo.refo_meth.bed
    Methylation information on fragments
  13. 13.
    cfTools::demo.sorted.bed
    Paired-end sequencing reads
  14. 14.
    cfTools::marker_index
    Marker name
  15. 15.
    cfTools::markers.bed
    Genomic postions of markers
  16. 16.
    cfTools::sample_type
    Sample type